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1 Setup
2 Configuring Clock Card
- 2.1 Programming via Front-panel JTAG connector
- 2.2 Programming via on-board P2 JTAG connector
3 Testing General Features (card_all_test)
4 testing communication with backplane silicon_id chip
5 lvds rx/tx or command/reply lines
6 Sync Box communication and clock circuitry
7 reset switch and brst line
8 Supported operating systems
9 Ubuntu 16.04 and later
10 Ubuntu 14.04
- 10.1 Install additional ubuntu packages
- 10.2 Bigphysarea kernel patch
11 Ubuntu 12.04 and earlier
12 Configure the system for MCE users
13 Download (checkout) MAS and mce_script
14 Compile and install MAS
15 Install mce_script
16 Support overview
17 Invocation
18 System configuration
19 Dirfile fields

Setup

The following equipments are needed:

mas PC: An ubuntu-based PC with ARC-64 PCI card installed an running mas software.
A fully populated 5-MDM MCE subrack with Device under test (DUT) plugged into this backplane during testing.
fibre-optic cable: connects mas-PC to Clock Card.
set of Linear supplies to power up the cards. (3V, 4.5V, 6.2V, -6.2V)
Altera USB programmer: attached to the JTAG connector in Clock card front panel.
PC with Quartus installed: used to program FPGA and configuration devices on Readout Card.
Sync Box with a fiber-optic cable connecting a fiber output to the sync input of the Clock Card.

If you have all the above and if your DUT has already been smoke tested, you are ready to start:

Connect all the cables.
unplug all cards from Subrack except Clock card unit under test, (just pull out, so they are not inserted)
Power on the MCE and if the clock card is not progammed, the red led should be on.

Configuring Clock Card

The FPGA on clock card (U7) can be configured from one of the two on-board configuration devices (EPC16): A factory configuration device (U18) and an application configuration device (U17). The factory configuration is loaded upon power up and hard reset. The application configuration is loaded by issuing a command on the mas PC: wb cc config_app 1.

The FPGA and the application configuration device can be programmed through the front-panel JTAG port while the factory configuration device can be programmed from the on-board connector.

Programming via Front-panel JTAG connector

Load FPGA firmware using Quartus. Firmware is located at http://e-mode.phas.ubc.ca/mce_firmware/. Run auto-detect and you should see list of devices. The part at the bottom of the list corresponts to Clock card FPGA and the part above it in the list is EPC16 or the "application configuration device". Right click on the row and choose a file to program. Load following firmware from the above directory: CC firmware 5.0.e, cc_v0500000e_15may2012.sof for FPGA and cc_v0500000e_15may2012.pof for EPC16. Then checkmark the program button for both devices and press start programming. The green LED should come up when programming is done.
If the tx/rx fibers are connected right, the red LED is off and the green LED is on. If the Sync Box fiber is connected and Sync Box is on, then the amber LED is also off.
Now make sure that the card communicates with the PC.

 mce_cmd -x rb cc fw_rev

and you will see:

 Line   0 : ok : 0x500000e

So far, you confirmed that FPGA is programmed successfully and the fiber interface is working.

Now, proceed to programming the factory-configuration device.

Programming via on-board P2 JTAG connector

Now turn off the MCE,
unplug the Clock Card and move the JTAG programming cable from the front-panel to the on-board P2 connector. plug the card back in and let the cable slide through the slot.
Power on the MCE.
In Quartus, press on auto-detect and you should only see two devices listed. Choose the same pof file for EPC16.

cc_v0500000e_15may2012.pof

Turn off the MCE, unplug the card and remove the JTAG cable. Then re-insert the card and power on the MCE.
The green LED should come on. Ths confirms that factory configuraiton is loaded successfully upon power up.

Verify that the application configuration can be loaded successfuly:

mce_cmd -x wb cc config_app 1

The Green LED should momentarily go off, the red LED should momentarily turn on and then when firmware is loaded, green LED would be on and red is off. This shows that application configuration is loaded successfully.

Note 1: Sometimes the reconfiguration time exceeds the timeout period and you get an "MCE timeout" message. Issue another command like rb cc fw_rev to verify that the FPGA was reconfigured successfully.
Note 2: Sometimes when you switch between external and internal clock, you get an "Unexpected interface (DSP) error" caused by an accidental character transmit on the fiber during configuration switch over, if this happens, you need to reset the PCI card by issuing: mce_cmd -x dsp_reset.

Testing General Features (card_all_test)

The following script is used to test features that are common to all MCE cards: LED, silicon id, card_type, PCB revision, LEDs, dip switches, etc.

On mas PC, type:

card_all_test -c cc SCC-NNN

The output should look like:

 ****** Check to make sure the LEDs on the target card switched status! ****
 Unit Under Test  :  CC
 Serial Number    :  SCC-069
 Firmware Revision:  5.0.e
 card_id          :  0x20be502
 slot_id          :  [8]
 card_type        :  3
 card_rev         :  D
 fpga_temp        :  34 C pass
 card_temp        :  28 C pass
 results are in   :  /data/cryo/current_data/SCC-069_1285959943_all_test

copy the results into the test logfile and record the card_id on MCE CARD Serial-Number Lookup

testing communication with backplane silicon_id chip

issue following commands to make sure clock card can read the silicon_id and temperature from the id chip on the backplane:

mce_cmd -x rb cc box_id
mce_cmd -x rb cc box_temp

record the results in logfile

lvds rx/tx or command/reply lines

run mce_status -s|grep fw_rev and you should see all cards listed, make sure there are 9 replies. cc fw_rev : 0x500000e rc1 fw_rev : 0x5010005 rc2 fw_rev : 0x5010005 rc3 fw_rev : 0x5010005 rc4 fw_rev : 0x5010005 bc1 fw_rev : 0x5000000 bc2 fw_rev : 0x5000000 bc3 fw_rev : 0x5000000 ac fw_rev : 0x5000004

If any of the replies is ERROR and the card is present, then check you need to debug the corresponding lvds_rx on Clock Card.

Record the result in logfile.

Sync Box communication and clock circuitry

Check the amber LED and it should be on if the Sync input is not connected or if the Sync Box is off. Check to see the LED go off when the Sync Box is turned on and the fiber cable is connected to the Sync input. Now on mas PC, issue the following commands:

wb cc select_clk 1
wb cc use_dv 2
wb cc use_sync 2
rb cc select_clk

The last command should return 1 which means the Clock Card is still running from the Sync Box clk.

Note: Sometimes when you switch between external and internal clock, you get an "Unexpected interface (DSP) error" caused by an accidental character transmit on the fiber, if this happens, you need to reset the PCI card by issuing: mce_cmd -x dsp_reset.

Take some data to verify that the manchester decoder is working:

mce_run test_data_xxxx 100 1

check to see whether the file exist and has some data. Then unplug the Sync input and issue:

wb cc led 7

no reply should come back. Now issue

rb cc select_clk

and the result should be 0 which means the clock has fallen back on the internal clock on clock card.

reset switch and brst line

Press the switch on the front panel and you should see the green LED go off and red LED go on indicating configuration file reloaded. After few seconds, the red one should go off and green one come back on indicating that the reset switch works properly.

To make sure brst line on Clock Card is working, toggle the LEDs from their default state and then issue a reset command and make sure the LEDs go to their default state (only Green on) which would mean the reset worked.

wb rc1 led 7

(red and amber LED go on, green goes off)

mce_cmd -x mce_reset

log results

Supported operating systems

We use Ubuntu.

We only support LTS releases. Currently, we support:
- 18.04
- 16.04
- 14.04

Ubuntu 16.04 and later

The removal of the bigphysarea requirement from the kernel module means it's much easier to install MAS now. Because you don't need to rebuild your kernel, it should be possible to simply checkout the MAS trunk. Start by skipping down to the Download (checkout) MAS and mce_script step, and then continue with installing MAS and MCE script.

Ubuntu 14.04

The automated installation package is tested, but as Ubuntu tweaks its packages the install script may fall slightly out of sync. It's worth a shot though.

After installing Ubuntu 14.04, get the install tarball:

wget http://e-mode.phas.ubc.ca/mce/pc_install/install_tools/mce_install_ubuntu_14.04.tar.gz
tar -xzf ubuntu_14.04_install.tar.gz
cd install/

Install additional ubuntu packages

From that install folder, run

bash install.bash

It can't hurt to run this a couple of times to make sure all dependencies are resolved.

Bigphysarea kernel patch

You can either download the compiled kernels or build them from scratch.

From install folder, run EITHER

bash kernel_download.bash

or

bash kernel_build.bash

Compiled kernels currently exist for the x64 architecture.

Then when one or the other of those has succeeded, install them:

bash kernel_install.bash

You can now proceed to the section below titled "Configure the system for MCE users".

Ubuntu 12.04 and earlier

See MAS OS setup on obsolete systems

Configure the system for MCE users

Setup environment for MCE user

We tend to assume that a single user and group will have dominion over the MCE software, scripts, and data. We often assume that this user will be called "mce". But it doesn't need to be. Even if multiple users are running things through their own accounts it is likely useful to have a single group that can be used to manage access to the data.

Anyway, to set up a reasonable MCE user, see MAS user setup.

All users using the MCE will need to define some environment variables to use the scripts. See the above link for lines to add to your .bashrc.

System umask

You may want to set the system umask to make for a system where it's easier to share Set the umask for all users to give write access for their group by default.

Edit /etc/profile and change the "umask 022" line to

umask 002

Edit /etc/login.defs and find the line that start "# UMASK" and change it to

UMASK           002

Folders

mce_script assumes that /data/cryo/ exists and can be manipulated. To create something reasonable:

MCE_USER=mce
MCE_GROUP=mce
sudo mkdir /data
sudo chown $MCE_USER:$MCE_GROUP /data
sudo chmod g+ws /data
mkdir /data/cryo/

Download (checkout) MAS and mce_script

See MAS svn repository.

Compile and install MAS

The following procedure outlines the default situation, where MAS is being installed on a computer containing only one fibre card. For information on running MAS with multiple fibre cards in one computer, see Multicard MAS.

Makefile.svn

MAS uses autoconf for some basic configuration stuff. After checking out MAS from the SVN repository the first time, you need to bootstrap the autoconf process. To simplify this, the Makefile.svn file will automate the process. From the MAS source folder run

 make -f Makefile.svn

If successful, this will create the "./configure" script. This step is only required on fresh check-outs of the repository. If you already have a ./configure script, even if it's out of date, you can skip this step. (After having been bootstrapped the first time, the build system is smart enough to know when it needs to regenerate itself.)

Note: this procedure requires autoconf. If it's not installed, install it with:

 sudo apt-get install autoconf

./configure

Once the configure script exists, run it to generate the build system (ie. the Makefiles). The biggest thing you usually need to tell it is what the basic username and group should be for mce data. Also, there are a few options for the driver and some stupid python stuff.

From the MAS source folder, run

./configure

Some useful options:

 --disable-driver        suppress driver compilation/installation
 --disable-bigphysarea   compile driver without bigphysarea support
 --disable-config2       suppress mas.cfg and mce.cfg generation/installation
 --enable-multicard      build a version of MAS which can drive multiple fibre cards.  (See Multicard MAS for specifics.)
 --with-user=USER        set default MCE user
 --with-group=GROUP      set default MCE group
 --with-kernel-dir=DIR   set kernel build directory (typically automatically determined)

Run

./configure --help

for a full list. When running, configure will complain if it cannot find something, and even suggest what package you need to install.

mce.cfg

After running configure, but before running make, you must specify a template file (mce.cin) which will be used to generate the hardware configuration file (mce.cfg). Full details of this procedure are given in the mce.cfg page, but briefly:

copy an appropriate template from config2/templates to config2/mce.cin
edit the config2/mce.cin file to describe your MCE.

The configuration file will be installed automatically when make install is run below. This entire step can be skipped if you passed --disable-config2 to configure above, but note that MAS will not function without mce.cfg and mas.cfg installed.

make

This often works.

make clean; make

Troubleshooting

Sometimes after doing an SVN update make doesn't work but instead returns the cryptic message:

*** No rule to make target `defaults/masdefault.m4', needed by `aclocal.m4'.

In this case, it's necessary to force a rebuild of the build system manually by running

make -f Makefile.svn
./configure

See the Makefile.svn section above for further details.

Test the driver

It is wise to test that the driver does not kill your machine before installing it to load on boot. After compiling do:

cd driver
sudo ./reload

This will load the driver, which should then try to talk to the SDSU PCI card if it is installed. Note that since "reload" first unloads the driver if it is present, and then loads the driver from the current folder, it may report an "ERROR" message if the first step fails, even though the driver is successfully loaded. The definitive way to check that the driver is loaded is

 cat /proc/mce_dsp

If this file does not exist, the driver isn't loaded. If the cat prints out a bunch of low-level driver information, you're in good shape.

sudo make install

If you're satisfied that the driver works, install the whole thing. Go back up to the MAS base folder and run

sudo make install

This will do the following:

install the kernel driver, driver/mce_dsp.ko, into /lib/modules/$(uname -r)/kernel/drivers/misc/, and re-scan the module dependencies.
install the MAS binaries from applications/ and the scripts from script/ into /usr/mce/bin
install the MAS udev ruleset scripts/91-mas.rules into /etc/udev/rules.d/. These udev rules will ensure that the mce_dsp module is loaded and the MAS device nodes are created at boot time. You can get udev to run these rules immediately, which will result in /dev being populated with the mce devices, by running:

 sudo udevadm trigger

or, else, you can make the nodes yourself by running mas_mknodes.

install the mas logging daemon script /etc/init.d/mas init script. The driver can then be started/restarted as desired through this script:

/etc/init.d/mas restart

The driver will automatically be set to load on boot. To disable this, remove the symbolic link "/etc/rc2.d/S99mas".

install the hardware configuration file, config2/mce.cfg, and the MAS configuration file, config2/mas.cfg to /etc/mce/, assuming there aren't versions already there.

Install mce_script

Users have the option of running the MCE scripts from an svn working copy, or of running the MCE scripts from an "installed" copy. Talk to your MAS technician about which option is best for you.

Running from an svn working copy

Checkout the tree directly into /usr/mce:

cd /usr/mce
svn checkout svn://e-mode.phas.ubc.ca/mce_script/trunk mce_script

Running from an installed copy

Checkout the tree into your code folder; then make and install:

cd code
svn checkout svn://e-mode.phas.ubc.ca/mce_script/trunk mce_script
make
sudo make install

.bashrc

Add a few lines to .bashrc to update your PATH, PYTHONPATH, and to define the MAS_* variables. The new way, using mas_var, is:

eval `/usr/mce/bin/mas_var -e -s`

The old way, which will probably still work for a while:

export MAS_ROOT=/usr/mce/mce_script/
source $MAS_ROOT/template/mas_env.bash
export IDL_PATH="<IDL_DEFAULT>:$MAS_IDL/mas"

Configuration data

Example configuration files (especially experiment.cfg) are kept in mce_script/template. MAS, by default, expects user configuration data to be in /usr/mce/config. Users should copy the template/ files to /usr/mce/config/, and then make configuration adjustments. After install mce_script, you can copy the template config from it with:

sudo cp -r /usr/mce/mce_script/template /usr/mce/config
sudo chown -R mce /usr/mce/config

Support overview

As of mas/trunk/r384, MAS supports writing of dirfiles. The default dirfile version written by MAS has recently been upgraded to version Seven, to allow the use of signed bitfield extraction (see below). The writing of older versions is still supported, which can be used with older versions of KST, and which are still compatible with the modern GetData library.

Consult the sourceforge page for dirfile libraries and documentation:

http://getdata.sourceforge.net/

Although MAS can write dirfiles, we do not currently provide a facility for reading dirfiles into python or IDL, as we do for MCE flatfiles. The GetData library provides basic bindings for reading dirfiles in both IDL and Python, but these lack MAS specific benefits of reading flatfiles with MAS and MCE script. We recommend that flatfiles be used for tuning and diagnostic data, with dirfiles only used for long acquisitions that will be analyzed off-line or by non-MAS software.

Dirfiles are very useful for large, multi-rate data sets. They are not ideal in all circumstances, however.

Invocation

To acquire data into a dirfile, pass the --dirfile option to mce_run:

mce_run 10000 dirfile_0526 s --dirfile

This will create a dirfile at $MAS_DATA/dirfile_0526/ , and acquire 10000 frames from all readout card channels.

Please note the following:

currently the "--dirfile" option must be listed after the three mandatory arguments.
"file-sequenced" operation is supported as of MAS r624 + mce_script r912. Pass "--sequence <chunk_size>" to break the acquisition into pieces containing <chunk_size> frames. The pieces will be numbered as dirfile_0526.000, dirfile_0526.001, etc.

System configuration

To prevent crazy programs from bringing down the system, Linux controls the maximum number of files that any one shell can have open. The dirfile writer needs to keep a file open for each data channel, and for MCE data this could be ~2000 separate files. If the OS limit is too low to accommodate this, we need to increase it.

To check current OS limit, run ulimit:

mhasse@gamow:~$ ulimit -n
1024

This is too small. To increase it, edit /etc/security/limits.conf . Add / edit lines for item "nofile":

*               soft    nofile          2048
*               hard    nofile          4096

After reboot, you should get

mhasse@gamow:~$ ulimit -n
2048

Dirfile fields

Raw fields

The dirfile consists of raw fields and derived fields. For MCE data, the raw fields consist of fields from the frame header:

status
frame_ctr
row_len
num_rows_reported
data_rate
address0_ctr
header_version
ramp_value
ramp_addr
num_rows
sync_box_num
runfile_id
userfield

as well as the 32 bit words returned for each detector channel:

tesdatar00c00
tesdatar00c01
...

Note that MAS will determine exactly what channels are returning data and name the fields appropriately. So when reading RC2 only with readout_row_index=4 and num_rows_reported=1, the output fields will be

tesdatar04c08
tesdatar04c09
tesdatar04c10
tesdatar04c11
tesdatar04c12
tesdatar04c13
tesdatar04c14
tesdatar04c15

Derived fields

Based on the Data Mode of each readout card, derived signals are extracted from the raw data and made available to libgetdata users. The field extraction and conversion is accomplished according to the same rules used by mce_data.py and mas_data.pro , i.e. the data are scaled to some reference level for that signal. See the discussion in the Data Mode page.

The field names for error, feedback, filtered feedback, and phi0 counter data are, respectively (for r00c00)

error_r00c00
fb_r00c00
filt_r00c00
fj_r00c00

For some conversions, it is necessary to first extract the bitfield from the raw MCE word and then scale it. In these cases an intermediate field will be created, e.g.:

INTER_filt_r00c00

Such fields can be ignored.

Warning about signed fields in mixed-mode data

Due to a request from the Matt on behalf of the MCE community, a signed bitfield derived type has been added to the Dirfile Standards. It has been available since Standards Version 7 (October 2009), although kst-1 binary packages, and even some GetData binary packages, often still don't support it.

MAS, in turn, has been modified to write by default these signed bitfields (SBIT). In order to support older versions of GetData and kst, however, they may be turned off by using the ACQ_OPTION command in mce_cmd to change the standards version used. If signed bitfields are disabled, the result is that signed signals from mixed-mode MCE data will appear as positive numbers, with 'negative' values -D represented by the large positive number 2^n - D. For example, in data mode 4 the error signal is encoded in the lowest-order 14 bits of the MCE word. An error reading of 12 gets encoded as 00000000001100 in binary and would be extracted as 12, but an error reading of -12 would be encoded with the 14 binary digits 11111111110100, and upon extraction would end up as 2^14 - 12 = 16372.

Sign-related issues can be corrected in down-stream software; there is no information loss. But upgrading your GetData/kst is encouraged to fix this problem.

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